Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RABGAP1RAB GTPase activating protein 1. (1069 aa)    
Predicted Functional Partners:
TUFT1
Tuftelin 1.
    
 
 0.660
RAB41
RAB41, member RAS oncogene family.
    
 0.605
RAB6A
RAB6A, member RAS oncogene family.
    
 0.605
RC3H2
Ring finger and CCCH-type domains 2.
   
  
 0.574
RAB1A
RAB1A, member RAS oncogene family.
    
 0.564
RAB33B
RAB33B, member RAS oncogene family.
    
 0.505
RABGEF1
Uncharacterized protein.
   
 
 0.502
TTC6
TPR_REGION domain-containing protein.
   
  
 0.498
RAB19
RAB19, member RAS oncogene family.
    
 0.491
RAB43
RAB43, member RAS oncogene family.
    
 0.491
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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