CAPRIN1 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CAPRIN1

Cell cycle associated protein 1. (704 aa)

Predicted Functional Partners:

G3BP1

0.968

G3BP2

0.898

CAPRIN2-2

0.895

FMR1

0.721

TIA1

0.688

FXR1

0.673

NAT10

0.653

USP10

0.631

TC2N

0.611

EIF3B

0.608

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAPRIN1	CAPRIN2-2	ENSAPLP00000006665	ENSAPLP00000030025	Cell cycle associated protein 1.	C1q domain-containing protein.	0.895
CAPRIN1	EIF3B	ENSAPLP00000006665	ENSAPLP00000029927	Cell cycle associated protein 1.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.608
CAPRIN1	FMR1	ENSAPLP00000006665	ENSAPLP00000031225	Cell cycle associated protein 1.	Fragile X mental retardation 1.	0.721
CAPRIN1	FXR1	ENSAPLP00000006665	ENSAPLP00000028519	Cell cycle associated protein 1.	FMR1 autosomal homolog 1.	0.673
CAPRIN1	G3BP1	ENSAPLP00000006665	ENSAPLP00000031794	Cell cycle associated protein 1.	G3BP stress granule assembly factor 1.	0.968
CAPRIN1	G3BP2	ENSAPLP00000006665	ENSAPLP00000024735	Cell cycle associated protein 1.	G3BP stress granule assembly factor 2.	0.898
CAPRIN1	NAT10	ENSAPLP00000006665	ENSAPLP00000007357	Cell cycle associated protein 1.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.653
CAPRIN1	TC2N	ENSAPLP00000006665	ENSAPLP00000004684	Cell cycle associated protein 1.	Tandem C2 domains, nuclear.	0.611
CAPRIN1	TIA1	ENSAPLP00000006665	ENSAPLP00000009697	Cell cycle associated protein 1.	TIA1 cytotoxic granule associated RNA binding protein.	0.688
CAPRIN1	USP10	ENSAPLP00000006665	ENSAPLP00000023444	Cell cycle associated protein 1.	Ubiquitin carboxyl-terminal hydrolase.	0.631
CAPRIN2-2	CAPRIN1	ENSAPLP00000030025	ENSAPLP00000006665	C1q domain-containing protein.	Cell cycle associated protein 1.	0.895
CAPRIN2-2	FMR1	ENSAPLP00000030025	ENSAPLP00000031225	C1q domain-containing protein.	Fragile X mental retardation 1.	0.434
CAPRIN2-2	G3BP1	ENSAPLP00000030025	ENSAPLP00000031794	C1q domain-containing protein.	G3BP stress granule assembly factor 1.	0.637
CAPRIN2-2	G3BP2	ENSAPLP00000030025	ENSAPLP00000024735	C1q domain-containing protein.	G3BP stress granule assembly factor 2.	0.637
CAPRIN2-2	USP10	ENSAPLP00000030025	ENSAPLP00000023444	C1q domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.470
EIF3B	CAPRIN1	ENSAPLP00000029927	ENSAPLP00000006665	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Cell cycle associated protein 1.	0.608
EIF3B	G3BP1	ENSAPLP00000029927	ENSAPLP00000031794	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	G3BP stress granule assembly factor 1.	0.682
EIF3B	G3BP2	ENSAPLP00000029927	ENSAPLP00000024735	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	G3BP stress granule assembly factor 2.	0.551
EIF3B	TIA1	ENSAPLP00000029927	ENSAPLP00000009697	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	TIA1 cytotoxic granule associated RNA binding protein.	0.630
FMR1	CAPRIN1	ENSAPLP00000031225	ENSAPLP00000006665	Fragile X mental retardation 1.	Cell cycle associated protein 1.	0.721