Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAPRIN1Cell cycle associated protein 1. (704 aa)    
Predicted Functional Partners:
G3BP2
G3BP stress granule assembly factor 2.
   
 
 0.988
G3BP1
G3BP stress granule assembly factor 1.
   
 
 0.987
FXR1
FMR1 autosomal homolog 1.
   
 
 0.913
CAPRIN2-2
C1q domain-containing protein.
 
      0.895
FMR1
Fragile X mental retardation 1.
   
 
 0.867
USP10
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.835
STAU1
Staufen double-stranded RNA binding protein 1.
   
 
 0.826
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
 
    
 0.770
DHX57
DExH-box helicase 57.
   
 
 0.760
YTHDF1
YTH N6-methyladenosine RNA binding protein 1.
    
 
 0.754
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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