STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA5Spermatogenesis associated 5. (1121 aa)    
Predicted Functional Partners:
UBXN7
UBX domain-containing protein 7.
   
 0.997
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.906
DERL1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.897
AMFR
Autocrine motility factor receptor.
    
 0.886
YOD1
YOD1 deubiquitinase.
   
 0.877
ERLEC1
Endoplasmic reticulum lectin 1.
    
 0.872
U3IEG1_ANAPP
Josephin domain-containing protein.
   
 0.860
ENSAPLP00000023897
Uncharacterized protein.
   
 0.846
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 0.821
NSFL1C
NSFL1 cofactor.
   
 0.818
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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