STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TOE1Target of EGR1, exonuclease. (331 aa)    
Predicted Functional Partners:
SNUPN
Snurportin 1.
    
 
 0.945
GEMIN8
Gem nuclear organelle associated protein 8.
      
 0.863
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
   0.824
SF3B3
Splicing factor 3b subunit 3.
    
   0.718
GEMIN4
Gem nuclear organelle associated protein 4.
   
  
 0.714
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 
 0.694
ENSAPLP00000017030
Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.
      
 0.688
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
   0.686
ENSAPLP00000016447
Uncharacterized protein.
    
   0.686
PPP1CC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.666
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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