STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMAT5Zinc finger matrin-type 5. (170 aa)    
Predicted Functional Partners:
RNPC3
RNA binding region (RNP1, RRM) containing 3.
   
 0.998
ZCRB1
Zinc finger CCHC-type and RNA binding motif containing 1.
    
 0.993
SNRNP48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
    
 0.985
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.980
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.976
ENSAPLP00000019327
Uncharacterized protein.
   
 0.970
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.967
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.967
SF3B1
Splicing factor 3b subunit 1.
   
 0.947
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.945
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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