STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMAT5Zinc finger matrin-type 5. (170 aa)    
Predicted Functional Partners:
RNPC3
RNA binding region (RNP1, RRM) containing 3.
   
 0.977
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.974
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.974
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.971
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.968
SF3B1
Splicing factor 3b subunit 1.
   
 0.966
ZCRB1
Zinc finger CCHC-type and RNA binding motif containing 1.
    
 0.962
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.957
SF3B4
Splicing factor 3b subunit 4.
   
 0.951
SPACA6
Ig-like domain-containing protein.
   
 0.940
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.