Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
CLOCKClock circadian regulator. (854 aa)    
Predicted Functional Partners:
CRY2
Cryptochrome circadian regulator 2.
   
 0.963
CRY1
Cryptochrome circadian regulator 1.
   
 0.959
ARNTL
Aryl hydrocarbon receptor nuclear translocator like.
   
0.934
U3J9M4_ANAPP
Photolyase/cryptochrome alpha/beta domain-containing protein.
   
 0.906
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
0.905
BHLHE41
Basic helix-loop-helix family member e41.
    
 0.844
CIPC
CLOCK interacting pacemaker.
    
 0.842
U3IC66_ANAPP
FAD_binding_7 domain-containing protein.
   
 0.834
CSNK1D
Casein kinase 1 delta; Belongs to the protein kinase superfamily.
    
 0.829
U3J4W3_ANAPP
Uncharacterized protein.
    
 0.824
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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