Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NID1Nidogen 1. (1339 aa)    
Predicted Functional Partners:
AGRN
Agrin.
   
 0.776
LAMC1
Laminin subunit gamma 1.
   
 0.739
LAMC3
Laminin subunit gamma 3.
   
 0.739
LAMA4
Laminin subunit alpha 4.
   
 0.717
LAMA4-2
Uncharacterized protein.
   
 0.717
LAMB3
Laminin subunit beta 3.
   
 0.713
LAMA3
Uncharacterized protein.
  
 0.710
FBLN1
Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes.
   
 
0.700
TNFAIP6
TNF alpha induced protein 6.
     
 0.688
LAMA5
Laminin subunit alpha 5.
   
 0.643
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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