RBM33 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM33

RNA binding motif protein 33. (1145 aa)

Predicted Functional Partners:

NOM1

0.749

RNF32

0.748

PGBD5

0.505

FAM83C

0.505

SAMD11

0.499

USP24

0.492

AIG1

0.433

DNAJC21

0.429

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIG1	RBM33	ENSAPLP00000008997	ENSAPLP00000007018	Androgen induced 1.	RNA binding motif protein 33.	0.433
DNAJC21	RBM33	ENSAPLP00000006374	ENSAPLP00000007018	DnaJ heat shock protein family (Hsp40) member C21.	RNA binding motif protein 33.	0.429
FAM83C	PGBD5	ENSAPLP00000007306	ENSAPLP00000000787	Family with sequence similarity 83 member C.	PiggyBac transposable element derived 5.	0.497
FAM83C	RBM33	ENSAPLP00000007306	ENSAPLP00000007018	Family with sequence similarity 83 member C.	RNA binding motif protein 33.	0.505
FAM83C	SAMD11	ENSAPLP00000007306	ENSAPLP00000028184	Family with sequence similarity 83 member C.	Sterile alpha motif domain containing 11.	0.505
NOM1	RBM33	ENSAPLP00000006215	ENSAPLP00000007018	Nucleolar protein with MIF4G domain 1.	RNA binding motif protein 33.	0.749
NOM1	RNF32	ENSAPLP00000006215	ENSAPLP00000006808	Nucleolar protein with MIF4G domain 1.	Ring finger protein 32.	0.748
PGBD5	FAM83C	ENSAPLP00000000787	ENSAPLP00000007306	PiggyBac transposable element derived 5.	Family with sequence similarity 83 member C.	0.497
PGBD5	RBM33	ENSAPLP00000000787	ENSAPLP00000007018	PiggyBac transposable element derived 5.	RNA binding motif protein 33.	0.505
PGBD5	SAMD11	ENSAPLP00000000787	ENSAPLP00000028184	PiggyBac transposable element derived 5.	Sterile alpha motif domain containing 11.	0.520
RBM33	AIG1	ENSAPLP00000007018	ENSAPLP00000008997	RNA binding motif protein 33.	Androgen induced 1.	0.433
RBM33	DNAJC21	ENSAPLP00000007018	ENSAPLP00000006374	RNA binding motif protein 33.	DnaJ heat shock protein family (Hsp40) member C21.	0.429
RBM33	FAM83C	ENSAPLP00000007018	ENSAPLP00000007306	RNA binding motif protein 33.	Family with sequence similarity 83 member C.	0.505
RBM33	NOM1	ENSAPLP00000007018	ENSAPLP00000006215	RNA binding motif protein 33.	Nucleolar protein with MIF4G domain 1.	0.749
RBM33	PGBD5	ENSAPLP00000007018	ENSAPLP00000000787	RNA binding motif protein 33.	PiggyBac transposable element derived 5.	0.505
RBM33	RNF32	ENSAPLP00000007018	ENSAPLP00000006808	RNA binding motif protein 33.	Ring finger protein 32.	0.748
RBM33	SAMD11	ENSAPLP00000007018	ENSAPLP00000028184	RNA binding motif protein 33.	Sterile alpha motif domain containing 11.	0.499
RBM33	USP24	ENSAPLP00000007018	ENSAPLP00000025548	RNA binding motif protein 33.	Ubiquitin specific peptidase 24; Belongs to the peptidase C19 family.	0.492
RNF32	NOM1	ENSAPLP00000006808	ENSAPLP00000006215	Ring finger protein 32.	Nucleolar protein with MIF4G domain 1.	0.748
RNF32	RBM33	ENSAPLP00000006808	ENSAPLP00000007018	Ring finger protein 32.	RNA binding motif protein 33.	0.748