STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SETD6SET domain containing 6, protein lysine methyltransferase. (437 aa)    
Predicted Functional Partners:
REL
REL proto-oncogene, NF-kB subunit.
    
 0.838
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
    0.732
TCEA1
Transcription elongation factor A1.
   
  
 0.619
DNAJC8
DnaJ heat shock protein family (Hsp40) member C8.
      
 0.611
CTTNBP2NL
CTTNBP2 N-terminal like.
      
 0.611
GOT1
Aspartate aminotransferase.
      
 0.601
COP1
COP1 E3 ubiquitin ligase.
      
 0.551
SETD4
SET domain containing 4.
    
 
 0.542
GAMT
Guanidinoacetate N-methyltransferase.
   
  
 0.540
POLR3C
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.535
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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