TMEM156 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TMEM156

Uncharacterized protein. (357 aa)

Predicted Functional Partners:

UBE2K

0.659

RBM47

0.653

FAM114A2

0.638

LIAS

0.612

RHOH

0.608

PDS5A

0.601

BEND4

0.585

SHISA3

0.583

LRRC66

0.583

RFC1

0.575

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BEND4	LRRC66	ENSAPLP00000030523	ENSAPLP00000032694	BEN domain containing 4.	Ig-like domain-containing protein.	0.675
BEND4	RBM47	ENSAPLP00000030523	ENSAPLP00000013789	BEN domain containing 4.	RNA binding motif protein 47.	0.547
BEND4	RHOH	ENSAPLP00000030523	ENSAPLP00000000674	BEN domain containing 4.	Ras homolog family member H.	0.531
BEND4	SHISA3	ENSAPLP00000030523	ENSAPLP00000008074	BEN domain containing 4.	Shisa family member 3.	0.673
BEND4	TMEM156	ENSAPLP00000030523	ENSAPLP00000007067	BEN domain containing 4.	Uncharacterized protein.	0.585
BEND4	UBE2K	ENSAPLP00000030523	ENSAPLP00000012280	BEN domain containing 4.	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.460
FAM114A2	LIAS	ENSAPLP00000023570	ENSAPLP00000011673	Family with sequence similarity 114 member A2.	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	0.527
FAM114A2	RFC1	ENSAPLP00000023570	ENSAPLP00000010416	Family with sequence similarity 114 member A2.	Replication factor C subunit 1.	0.636
FAM114A2	TMEM156	ENSAPLP00000023570	ENSAPLP00000007067	Family with sequence similarity 114 member A2.	Uncharacterized protein.	0.638
LIAS	FAM114A2	ENSAPLP00000011673	ENSAPLP00000023570	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	Family with sequence similarity 114 member A2.	0.527
LIAS	PDS5A	ENSAPLP00000011673	ENSAPLP00000012503	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	PDS5 cohesin associated factor A.	0.603
LIAS	RBM47	ENSAPLP00000011673	ENSAPLP00000013789	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	RNA binding motif protein 47.	0.416
LIAS	RFC1	ENSAPLP00000011673	ENSAPLP00000010416	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	Replication factor C subunit 1.	0.544
LIAS	RHOH	ENSAPLP00000011673	ENSAPLP00000000674	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	Ras homolog family member H.	0.408
LIAS	TMEM156	ENSAPLP00000011673	ENSAPLP00000007067	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	Uncharacterized protein.	0.612
LIAS	UBE2K	ENSAPLP00000011673	ENSAPLP00000012280	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.485
LRRC66	BEND4	ENSAPLP00000032694	ENSAPLP00000030523	Ig-like domain-containing protein.	BEN domain containing 4.	0.675
LRRC66	RBM47	ENSAPLP00000032694	ENSAPLP00000013789	Ig-like domain-containing protein.	RNA binding motif protein 47.	0.541
LRRC66	RHOH	ENSAPLP00000032694	ENSAPLP00000000674	Ig-like domain-containing protein.	Ras homolog family member H.	0.566
LRRC66	SHISA3	ENSAPLP00000032694	ENSAPLP00000008074	Ig-like domain-containing protein.	Shisa family member 3.	0.605