Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LARP1La ribonucleoprotein domain family member 1. (1084 aa)    
Predicted Functional Partners:
LARP1B
La ribonucleoprotein domain family member 1B.
   
   0.942
YBX1
Y-box binding protein 1.
   
 
 0.798
RC3H1
Ring finger and CCCH-type domains 1.
    
 
 0.792
FKBP7
Peptidylprolyl isomerase.
   
 
 0.725
ENSAPLP00000016573
RRM domain-containing protein.
   
 
 0.718
NFX1
Nuclear transcription factor, X-box binding 1.
   
   0.712
LIN28A
Lin-28 homolog A.
    
 
 0.698
DKC1
DKCLD domain-containing protein.
   
 
 0.694
DHX15
DEAH-box helicase 15.
   
 
 0.687
G3BP1
G3BP stress granule assembly factor 1.
   
 
 0.671
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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