STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIPF5Protein YIPF. (234 aa)    
Predicted Functional Partners:
SAMM50
SAMM50 sorting and assembly machinery component.
 
 
    0.900
YIPF3
Yip1 domain family member 3.
   
 
 0.780
DERL1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.723
ENSAPLP00000032397
Uncharacterized protein.
   
 
 0.698
RAB1A
RAB1A, member RAS oncogene family.
   
 
 0.696
GTF2A2
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
 
 
    0.639
MAEA
Macrophage erythroblast attacher.
   
 
 0.592
ITGB1BP2
Uncharacterized protein.
   
  
 0.547
LDHD
Lactate dehydrogenase D.
 
    
 0.534
HHATL
Hedgehog acyltransferase like; Belongs to the membrane-bound acyltransferase family.
   
  
 0.533
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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