Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TSPAN1Tetraspanin. (285 aa)    
Predicted Functional Partners:
TSPAN5
Tetraspanin.
      
 0.608
TSPAN14
Tetraspanin 14; Belongs to the tetraspanin (TM4SF) family.
      
 0.577
TSPAN19
Tetraspanin.
      
 0.545
TSPAN4
Tetraspanin.
      
 0.544
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
      
 0.544
PCDH1
Protocadherin 1.
     
 0.517
TM4SF1
Transmembrane 4 L six family member 1.
      
 0.482
RBM26
RNA binding motif protein 26.
      
 0.452
TSPAN2
Tetraspanin.
      
 0.444
TSPAN13
Tetraspanin 13; Belongs to the tetraspanin (TM4SF) family.
   
  
 0.441
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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