STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARBP1TAR (HIV-1) RNA binding protein 1. (1291 aa)    
Predicted Functional Partners:
MTREX
Mtr4 exosome RNA helicase.
   
    0.782
UTP20
UTP20 small subunit processome component.
   
    0.733
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.728
MRPL47
Mitochondrial ribosomal protein L47.
   
 
 0.724
GTPBP3
GTP binding protein 3, mitochondrial.
   
 
 0.716
MRPL13
Mitochondrial ribosomal protein L13.
  
 
 0.700
MRPL17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.692
GTPBP8
GTP binding protein 8 (putative).
  
 
 0.690
PALB2
Partner and localizer of BRCA2.
    
 
 0.672
MRPL21
Mitochondrial ribosomal protein L21.
   
   0.670
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.