STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KDM5BLysine demethylase 5B. (1527 aa)    
Predicted Functional Partners:
RB1
RB transcriptional corepressor 1.
    
 
 0.794
PAX9
Paired box 9.
    
 
 0.794
ATP5PO
Uncharacterized protein.
  
 0.769
ATP5F1A
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.769
ENSAPLP00000021287
Uncharacterized protein.
  
 0.769
ATP5F1C
ATP synthase subunit gamma.
  
 0.769
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.720
SETD1B
SET domain containing 1B, histone lysine methyltransferase.
   
 0.686
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.680
KDM5A
Lysine demethylase 5A.
   
   0.676
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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