U3IJI5_ANAPP protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

U3IJI5_ANAPP

HMG box domain-containing protein. (208 aa)

Predicted Functional Partners:

POLR1E

0.932

POLR1A

0.908

POLR1B

0.864

SIRT7

0.823

RRN3

0.815

TAF1D

0.794

TAF1C

0.772

MSX1

0.738

TAF6L

0.737

MAPK1

0.694

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAPK1	U3IJI5_ANAPP	ENSAPLP00000005723	ENSAPLP00000007407	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	HMG box domain-containing protein.	0.694
MSX1	U3IJI5_ANAPP	ENSAPLP00000025870	ENSAPLP00000007407	Msh homeobox 1.	HMG box domain-containing protein.	0.738
POLR1A	POLR1B	ENSAPLP00000013783	ENSAPLP00000003667	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1A	POLR1E	ENSAPLP00000013783	ENSAPLP00000010063	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase I subunit E.	0.999
POLR1A	RRN3	ENSAPLP00000013783	ENSAPLP00000004109	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RRN3 homolog, RNA polymerase I transcription factor.	0.986
POLR1A	SIRT7	ENSAPLP00000013783	ENSAPLP00000015159	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sirtuin 7.	0.804
POLR1A	TAF1C	ENSAPLP00000013783	ENSAPLP00000021887	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA-box binding protein associated factor, RNA polymerase I subunit C.	0.666
POLR1A	TAF1D	ENSAPLP00000013783	ENSAPLP00000016557	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.706
POLR1A	U3IJI5_ANAPP	ENSAPLP00000013783	ENSAPLP00000007407	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	HMG box domain-containing protein.	0.908
POLR1B	POLR1A	ENSAPLP00000003667	ENSAPLP00000013783	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1B	POLR1E	ENSAPLP00000003667	ENSAPLP00000010063	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase I subunit E.	0.999
POLR1B	RRN3	ENSAPLP00000003667	ENSAPLP00000004109	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RRN3 homolog, RNA polymerase I transcription factor.	0.973
POLR1B	TAF1C	ENSAPLP00000003667	ENSAPLP00000021887	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA-box binding protein associated factor, RNA polymerase I subunit C.	0.648
POLR1B	TAF1D	ENSAPLP00000003667	ENSAPLP00000016557	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.608
POLR1B	U3IJI5_ANAPP	ENSAPLP00000003667	ENSAPLP00000007407	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	HMG box domain-containing protein.	0.864
POLR1E	POLR1A	ENSAPLP00000010063	ENSAPLP00000013783	RNA polymerase I subunit E.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1E	POLR1B	ENSAPLP00000010063	ENSAPLP00000003667	RNA polymerase I subunit E.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1E	RRN3	ENSAPLP00000010063	ENSAPLP00000004109	RNA polymerase I subunit E.	RRN3 homolog, RNA polymerase I transcription factor.	0.972
POLR1E	SIRT7	ENSAPLP00000010063	ENSAPLP00000015159	RNA polymerase I subunit E.	Sirtuin 7.	0.417
POLR1E	TAF1C	ENSAPLP00000010063	ENSAPLP00000021887	RNA polymerase I subunit E.	TATA-box binding protein associated factor, RNA polymerase I subunit C.	0.683