STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RLIMRing finger protein, LIM domain interacting. (566 aa)    
Predicted Functional Partners:
NEXMIF
Neurite extension and migration factor.
 
    
 0.867
ENSAPLP00000025536
Ubiquitin-like domain-containing protein.
    
 0.821
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.801
CHIC1
Cysteine rich hydrophobic domain 1.
      
 0.748
UBE2D2
Ubiquitin conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.692
UBE2D3
Ubiquitin conjugating enzyme E2 D3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.692
ENSAPLP00000023897
Uncharacterized protein.
    
 0.670
KLHL15
Kelch like family member 15.
   
 
 0.653
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
   
 0.645
LDB1
LIM domain binding 1.
    
 
 0.644
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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