STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF130Ring finger protein 130. (438 aa)    
Predicted Functional Partners:
CGRRF1
Cell growth regulator with ring finger domain 1.
     
 0.646
RNF223
Ring finger protein 223.
     
 0.621
RNF144A
RBR-type E3 ubiquitin transferase.
     
 0.603
TMEM129
Transmembrane protein 129.
      
 0.585
SYNPO2
Synaptopodin 2.
   
  
 0.575
ENSAPLP00000025536
Ubiquitin-like domain-containing protein.
    
 0.571
OCIAD2
OCIA domain containing 2.
      
 0.566
ENSAPLP00000023897
Uncharacterized protein.
    
  0.549
FAM131B
Family with sequence similarity 131 member B.
      
 0.548
RNF170
Ring finger protein 170.
      
 0.547
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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