SAMD7 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SAMD7

Sterile alpha motif domain containing 7. (363 aa)

Predicted Functional Partners:

LRIT1

0.615

COPS9

0.610

SAMD5

0.586

GPR160

0.493

CERKL

0.434

ENSAPLP00000019805

0.434

ATP1A1

0.420

ENSAPLP00000020742

0.420

WFS1

0.416

SPARCL1

0.415

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP1A1	SAMD7	ENSAPLP00000011162	ENSAPLP00000007785	ATPase Na+/K+ transporting subunit alpha 1; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	Sterile alpha motif domain containing 7.	0.420
CERKL	ENSAPLP00000019805	ENSAPLP00000012211	ENSAPLP00000019805	DAGKc domain-containing protein.	Uncharacterized protein.	0.900
CERKL	SAMD7	ENSAPLP00000012211	ENSAPLP00000007785	DAGKc domain-containing protein.	Sterile alpha motif domain containing 7.	0.434
COPS9	GPR160	ENSAPLP00000032150	ENSAPLP00000011429	Uncharacterized protein.	G protein-coupled receptor 160.	0.610
COPS9	SAMD7	ENSAPLP00000032150	ENSAPLP00000007785	Uncharacterized protein.	Sterile alpha motif domain containing 7.	0.610
ENSAPLP00000019805	CERKL	ENSAPLP00000019805	ENSAPLP00000012211	Uncharacterized protein.	DAGKc domain-containing protein.	0.900
ENSAPLP00000019805	SAMD7	ENSAPLP00000019805	ENSAPLP00000007785	Uncharacterized protein.	Sterile alpha motif domain containing 7.	0.434
ENSAPLP00000020742	SAMD7	ENSAPLP00000020742	ENSAPLP00000007785	Cation_ATPase_N domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	Sterile alpha motif domain containing 7.	0.420
GPR160	COPS9	ENSAPLP00000011429	ENSAPLP00000032150	G protein-coupled receptor 160.	Uncharacterized protein.	0.610
GPR160	SAMD7	ENSAPLP00000011429	ENSAPLP00000007785	G protein-coupled receptor 160.	Sterile alpha motif domain containing 7.	0.493
LRIT1	SAMD7	ENSAPLP00000011707	ENSAPLP00000007785	Leucine rich repeat, Ig-like and transmembrane domains 1.	Sterile alpha motif domain containing 7.	0.615
SAMD5	SAMD7	ENSAPLP00000024934	ENSAPLP00000007785	Sterile alpha motif domain containing 5.	Sterile alpha motif domain containing 7.	0.586
SAMD7	ATP1A1	ENSAPLP00000007785	ENSAPLP00000011162	Sterile alpha motif domain containing 7.	ATPase Na+/K+ transporting subunit alpha 1; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	0.420
SAMD7	CERKL	ENSAPLP00000007785	ENSAPLP00000012211	Sterile alpha motif domain containing 7.	DAGKc domain-containing protein.	0.434
SAMD7	COPS9	ENSAPLP00000007785	ENSAPLP00000032150	Sterile alpha motif domain containing 7.	Uncharacterized protein.	0.610
SAMD7	ENSAPLP00000019805	ENSAPLP00000007785	ENSAPLP00000019805	Sterile alpha motif domain containing 7.	Uncharacterized protein.	0.434
SAMD7	ENSAPLP00000020742	ENSAPLP00000007785	ENSAPLP00000020742	Sterile alpha motif domain containing 7.	Cation_ATPase_N domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	0.420
SAMD7	GPR160	ENSAPLP00000007785	ENSAPLP00000011429	Sterile alpha motif domain containing 7.	G protein-coupled receptor 160.	0.493
SAMD7	LRIT1	ENSAPLP00000007785	ENSAPLP00000011707	Sterile alpha motif domain containing 7.	Leucine rich repeat, Ig-like and transmembrane domains 1.	0.615
SAMD7	SAMD5	ENSAPLP00000007785	ENSAPLP00000024934	Sterile alpha motif domain containing 7.	Sterile alpha motif domain containing 5.	0.586