STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBAC1UBA domain containing 1. (437 aa)    
Predicted Functional Partners:
RNF123
Ring finger protein 123.
   
 
 0.979
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.888
USP48
Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family.
    
   0.789
CAMSAP1
Calmodulin regulated spectrin associated protein 1.
 
    
 0.771
UTP6
UTP6 small subunit processome component.
    
   0.753
PITHD1
PITH domain containing 1.
      
 0.664
UBL7
Ubiquitin like 7.
    
 0.661
FRA10AC1
FRA10A associated CGG repeat 1.
      
 0.654
PMPCA
Peptidase, mitochondrial processing alpha subunit; Belongs to the peptidase M16 family.
   
  
 0.642
VIM
Vimentin; Belongs to the intermediate filament family.
      
 0.637
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.