STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL5A2Collagen type V alpha 2 chain. (1455 aa)    
Predicted Functional Partners:
ENSAPLP00000020214
LAM_G_DOMAIN domain-containing protein.
 
   
 0.939
COL5A1
Fibrillar collagen NC1 domain-containing protein.
  
  
0.906
COL11A1
Fibrillar collagen NC1 domain-containing protein.
  
  
0.904
ENSAPLP00000025911
LAM_G_DOMAIN domain-containing protein.
 
   
 0.733
ADAMTS6
ADAM metallopeptidase with thrombospondin type 1 motif 6.
    
 0.571
PPWD1
Peptidylprolyl isomerase domain and WD repeat containing 1.
      
 0.557
LUM
Lumican.
   
 0.526
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.490
CENPK
Centromere protein K.
     
 0.466
TGM2
Transglutaminase 2.
    
 0.458
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.