STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL5A2Collagen type V alpha 2 chain. (1455 aa)    
Predicted Functional Partners:
LUM
Lumican.
   
 0.623
COL6A1
VWFA domain-containing protein.
  
0.582
ADAMTS6
ADAM metallopeptidase with thrombospondin type 1 motif 6.
    
 0.568
ENSAPLP00000025911
LAM_G_DOMAIN domain-containing protein.
 
      0.567
PPWD1
Peptidylprolyl isomerase domain and WD repeat containing 1.
      
 0.554
CENPK
Centromere protein K.
     
 0.516
COL16A1
Collagen type XVI alpha 1 chain.
  
0.512
ADAMTS2
ADAM metallopeptidase with thrombospondin type 1 motif 2.
   
 0.498
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.477
ITGA11
Integrin subunit alpha 11; Belongs to the integrin alpha chain family.
    
 0.477
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.