STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB41RAB41, member RAS oncogene family. (191 aa)    
Predicted Functional Partners:
GDI2
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.932
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.864
ARL1
ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.
   
 0.854
VPS39
VPS39 subunit of HOPS complex.
    
 
 0.819
GCC2
GRIP and coiled-coil domain containing 2.
    
 0.809
VPS53
VPS53 subunit of GARP complex.
    
 0.786
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.756
RGP1
RGP1 homolog, RAB6A GEF complex partner 1.
    
 0.755
STX16
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.743
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.739
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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