Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYNMSynemin; Belongs to the intermediate filament family. (1593 aa)    
Predicted Functional Partners:
DES
Desmin; Belongs to the intermediate filament family.
   
 
 0.706
SYNC
Syncoilin, intermediate filament protein.
   
 0.687
AMPH
Amphiphysin.
    
   0.627
BIN1
Bridging integrator 1.
    
   0.627
SYNPO2
Synaptopodin 2.
   
 
 0.610
FNDC5
Fibronectin type III domain containing 5.
    
 
 0.603
MYOZ1
Myozenin 1.
      
 0.602
CHSY1
Hexosyltransferase.
      
 0.601
CNTNAP5
Contactin associated protein like 5.
      
 0.585
ADAMTS17
ADAM metallopeptidase with thrombospondin type 1 motif 17.
   
  
 0.570
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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