STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C9orf78Chromosome 9 open reading frame 78. (289 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
   
 
 0.860
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.827
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.810
SYF2
SYF2 pre-mRNA splicing factor.
   
 
 0.779
PPIL1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.761
TOR1B
Torsin family 1 member B.
 
    
 0.756
NKAP
NFKB activating protein.
   
 
  0.755
USP20
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.752
FNBP1
Formin binding protein 1.
   
  
 0.751
FAM32A
Family with sequence similarity 32 member A.
   
 
  0.666
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.