STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USH2AUsherin. (5198 aa)    
Predicted Functional Partners:
WHRN
Whirlin.
    
 0.915
PDZD7
PDZ domain-containing protein.
    
 
 0.847
ENSAPLP00000017270
Uncharacterized protein.
    
 
 0.847
CDH23
Cadherin related 23.
      
 0.815
USH1C
USH1 protein network component harmonin.
    
 
 0.809
USH1G
USH1 protein network component sans.
    
 0.761
PCDH15
Protocadherin related 15.
   
  
 0.754
MYO7A
Myosin VIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.754
CLRN1
Clarin 1.
      
 0.748
ABCA4
ATP binding cassette subfamily A member 4.
   
  
 0.708
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.