STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL25A1Collagen type XXV alpha 1 chain. (401 aa)    
Predicted Functional Partners:
COL5A1
Fibrillar collagen NC1 domain-containing protein.
 
 
 
0.903
ENSAPLP00000027130
Endostatin domain-containing protein.
 
  
  0.899
COL4A3
Collagen IV NC1 domain-containing protein.
 
    
0.891
COL11A1
Fibrillar collagen NC1 domain-containing protein.
 
 
 
0.867
U3IAT1_ANAPP
Fibrillar collagen NC1 domain-containing protein.
 
  
  0.802
COL27A1
LAM_G_DOMAIN domain-containing protein.
 
   
 0.769
COL1A1
Collagen type I alpha 1 chain.
 
 
0.761
ENSAPLP00000029495
Uncharacterized protein.
 
  
 
0.717
COL21A1
VWFA domain-containing protein.
 
   
 0.689
COL26A1
Collagen type XXVI alpha 1 chain.
  
  
 
0.660
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.