TNFSF13B protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TNFSF13B

TNF superfamily member 13b; Belongs to the tumor necrosis factor family. (306 aa)

Predicted Functional Partners:

TNFRSF13B

0.992

ENSAPLP00000023833

0.965

TNFRSF17

0.948

CD40LG

0.879

TRAF3

0.816

TNFSF11

0.779

CD40

0.775

MAP3K14

0.704

CD86

0.667

IL1RL1

0.631

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD40	CD40LG	ENSAPLP00000016411	ENSAPLP00000012063	TNFR-Cys domain-containing protein.	CD40 ligand; Belongs to the tumor necrosis factor family.	0.999
CD40	CD86	ENSAPLP00000016411	ENSAPLP00000026026	TNFR-Cys domain-containing protein.	CD86 molecule.	0.965
CD40	ENSAPLP00000023833	ENSAPLP00000016411	ENSAPLP00000023833	TNFR-Cys domain-containing protein.	BaffR-Tall_bind domain-containing protein.	0.454
CD40	MAP3K14	ENSAPLP00000016411	ENSAPLP00000003967	TNFR-Cys domain-containing protein.	Mitogen-activated protein kinase kinase kinase 14.	0.454
CD40	TNFSF11	ENSAPLP00000016411	ENSAPLP00000004967	TNFR-Cys domain-containing protein.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.894
CD40	TNFSF13B	ENSAPLP00000016411	ENSAPLP00000008380	TNFR-Cys domain-containing protein.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.775
CD40	TRAF3	ENSAPLP00000016411	ENSAPLP00000028635	TNFR-Cys domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.861
CD40LG	CD40	ENSAPLP00000012063	ENSAPLP00000016411	CD40 ligand; Belongs to the tumor necrosis factor family.	TNFR-Cys domain-containing protein.	0.999
CD40LG	CD86	ENSAPLP00000012063	ENSAPLP00000026026	CD40 ligand; Belongs to the tumor necrosis factor family.	CD86 molecule.	0.776
CD40LG	ENSAPLP00000023833	ENSAPLP00000012063	ENSAPLP00000023833	CD40 ligand; Belongs to the tumor necrosis factor family.	BaffR-Tall_bind domain-containing protein.	0.753
CD40LG	MAP3K14	ENSAPLP00000012063	ENSAPLP00000003967	CD40 ligand; Belongs to the tumor necrosis factor family.	Mitogen-activated protein kinase kinase kinase 14.	0.594
CD40LG	TNFRSF13B	ENSAPLP00000012063	ENSAPLP00000031762	CD40 ligand; Belongs to the tumor necrosis factor family.	TACI-CRD2 domain-containing protein.	0.597
CD40LG	TNFRSF17	ENSAPLP00000012063	ENSAPLP00000003754	CD40 ligand; Belongs to the tumor necrosis factor family.	TNF receptor superfamily member 17.	0.489
CD40LG	TNFSF11	ENSAPLP00000012063	ENSAPLP00000004967	CD40 ligand; Belongs to the tumor necrosis factor family.	TNF superfamily member 11; Belongs to the tumor necrosis factor family.	0.621
CD40LG	TNFSF13B	ENSAPLP00000012063	ENSAPLP00000008380	CD40 ligand; Belongs to the tumor necrosis factor family.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.879
CD40LG	TRAF3	ENSAPLP00000012063	ENSAPLP00000028635	CD40 ligand; Belongs to the tumor necrosis factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.807
CD86	CD40	ENSAPLP00000026026	ENSAPLP00000016411	CD86 molecule.	TNFR-Cys domain-containing protein.	0.965
CD86	CD40LG	ENSAPLP00000026026	ENSAPLP00000012063	CD86 molecule.	CD40 ligand; Belongs to the tumor necrosis factor family.	0.776
CD86	TNFSF13B	ENSAPLP00000026026	ENSAPLP00000008380	CD86 molecule.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.667
ENSAPLP00000023833	CD40	ENSAPLP00000023833	ENSAPLP00000016411	BaffR-Tall_bind domain-containing protein.	TNFR-Cys domain-containing protein.	0.454