STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGXB4HMG-box containing 4. (665 aa)    
Predicted Functional Partners:
BPTF
Bromodomain PHD finger transcription factor.
    
  0.531
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 0.523
FOXRED2
Uncharacterized protein.
      
 0.493
RASD2
RASD family member 2.
      
 0.487
MCM5
DNA helicase; Belongs to the MCM family.
      
 0.465
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
  0.447
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
  0.447
CECR2
CECR2 histone acetyl-lysine reader.
    
 0.432
TOM1
Target of myb1 membrane trafficking protein; Belongs to the TOM1 family.
 
    
 0.413
INTS8
Integrator complex subunit 8.
      
 0.407
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.