Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMGXB4HMG-box containing 4. (665 aa)    
Predicted Functional Partners:
BPTF
Bromodomain PHD finger transcription factor.
    
  0.912
SMARCA1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.
    
 0.755
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 0.726
FOXRED2
Uncharacterized protein.
      
 0.695
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
  0.685
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
  0.685
RASD2
RASD family member 2.
      
 0.667
ZMIZ1
Zinc finger MIZ-type containing 1.
   
  
 0.666
MCM5
DNA helicase; Belongs to the MCM family.
      
 0.649
TRIP12
Thyroid hormone receptor interactor 12.
    
   0.616
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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