Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB8ARAB8A, member RAS oncogene family. (207 aa)    
Predicted Functional Partners:
MICALL2
MICAL like 2.
    
 0.945
SMCR8
SMCR8-C9orf72 complex subunit.
    
 0.928
C9orf72
C9orf72-SMCR8 complex subunit.
    
 0.925
ENSAPLP00000020863
Uncharacterized protein.
  
 
0.918
WDR41
WD repeat domain 41.
     
 0.918
SQSTM1
Uncharacterized protein.
    
 0.909
RAB39B
RAB39B, member RAS oncogene family.
  
 
 
0.905
RAB8B
RAB8B, member RAS oncogene family.
  
  
 
0.901
RILPL2
Rab interacting lysosomal protein like 2.
   
 
 0.775
RAB3IP
Sec2p domain-containing protein.
    
 0.753
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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