STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF11PHD finger protein 11. (285 aa)    
Predicted Functional Partners:
SETDB2
SET domain bifurcated histone lysine methyltransferase 2.
 
    
 0.790
MMD
Monocyte to macrophage differentiation associated.
      
 0.713
CDADC1
Cytidine and dCMP deaminase domain containing 1.
   
  
 0.672
KCTD17
Potassium channel tetramerization domain containing 17.
      
 0.665
RCBTB2
RCC1 and BTB domain containing protein 2.
     
 0.660
ADAM33
ADAM metallopeptidase domain 33.
      
 0.638
RCBTB1
RCC1 and BTB domain containing protein 1.
     
 0.597
LLPH
LLP homolog, long-term synaptic facilitation factor.
      
 0.580
RBM43
RRM domain-containing protein.
   
  
 0.572
NUBPL
Nucleotide binding protein like.
      
 0.568
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.