Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXD4Homeobox D4. (237 aa)    
Predicted Functional Partners:
HOXD3
Homeobox D3.
   
  
 0.957
HOXA4
Homeobox A4.
   
    0.927
HOXC4
Homeobox C4.
   
 
 0.716
HOXB7
Homeobox B7.
   
 
 0.712
HOXA7
Homeobox A7.
   
   0.689
HOXB6
Homeobox B6.
   
 
 0.669
HOXC6
Homeobox C6.
   
 
 0.631
HOXB5
Homeobox B5.
   
   0.624
HOXB4
Homeobox B4.
   
   0.607
HOXA6
Homeobox A6.
   
   0.563
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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