Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SF3A1Splicing factor 3a subunit 1. (738 aa)    
Predicted Functional Partners:
SF3A3
Splicing factor 3a subunit 3.
   
 0.999
SF3A2
Splicing factor 3a subunit 2.
   
 0.999
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.992
SF3B4
Splicing factor 3b subunit 4.
   
 0.992
SF3B1
Splicing factor 3b subunit 1.
   
 0.990
SF3B3
Splicing factor 3b subunit 3.
   
 0.986
DHX15
DEAH-box helicase 15.
   
 0.985
RBM17
RNA binding motif protein 17.
   
 0.979
PHF5A
PHD finger protein 5A.
   
 0.969
U2SURP
U2 snRNP associated SURP domain containing.
   
0.965
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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