STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (582 aa)    
Predicted Functional Partners:
DDX42
Uncharacterized protein.
 
 
 
 0.938
DDX17
DEAD-box helicase 17; Belongs to the DEAD box helicase family.
  
 
0.888
SF3B1
Splicing factor 3b subunit 1.
   
 0.879
DGCR8
DGCR8 microprocessor complex subunit.
    
 
 0.842
RBM39
RNA binding motif protein 39.
   
 0.841
DROSHA
Drosha ribonuclease III.
   
 
 0.835
ESR1
Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.
    
 0.829
SLU7
SLU7 homolog, splicing factor.
   
 0.805
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.789
MTREX
Mtr4 exosome RNA helicase.
   
 0.767
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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