Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (582 aa)    
Predicted Functional Partners:
DDX17
DEAD-box helicase 17; Belongs to the DEAD box helicase family.
   
 
 0.997
RBM39
RNA binding motif protein 39.
   
 0.968
ENSAPLP00000017783
Uncharacterized protein.
   
    0.959
ENSAPLP00000029053
RRM domain-containing protein.
   
 0.958
DROSHA
Drosha ribonuclease III.
   
 
 0.956
ENSAPLP00000029972
RRM domain-containing protein.
   
 0.952
SF3B1
Splicing factor 3b subunit 1.
   
 0.950
MTREX
Mtr4 exosome RNA helicase.
   
 0.949
DDX42
Uncharacterized protein.
 
 
  
 0.941
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.935
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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