STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN13Calpain 13; Belongs to the peptidase C2 family. (682 aa)    
Predicted Functional Partners:
YIPF6
Protein YIPF.
      
 0.747
CAPNS2
Calpain small subunit 2.
   
0.718
ENSAPLP00000032537
Uncharacterized protein.
   
 0.712
ENSAPLP00000026229
Uncharacterized protein.
      
 0.635
MINDY3
MINDY lysine 48 deubiquitinase 3.
   
  
 0.587
ENSAPLP00000020757
Uncharacterized protein.
   
 
  0.534
ENSAPLP00000024521
EH domain-containing protein.
   
 
  0.534
ENSAPLP00000028453
annotation not available
   
 
  0.534
ENSAPLP00000028515
Uncharacterized protein.
   
 
  0.534
ITSN2
Uncharacterized protein.
   
 
  0.534
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.