PTAR1 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PTAR1

Protein prenyltransferase alpha subunit repeat containing 1. (544 aa)

Predicted Functional Partners:

RABGGTB

0.954

CHM

0.909

SKP1

0.773

RAB26

0.643

RAB9B

0.633

RAB9A

0.633

GDI2

0.616

RAB14

0.567

U3J047_ANAPP

0.556

RAB30

0.554

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHM	GDI2	ENSAPLP00000029712	ENSAPLP00000007195	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.646
CHM	PTAR1	ENSAPLP00000029712	ENSAPLP00000008935	Uncharacterized protein.	Protein prenyltransferase alpha subunit repeat containing 1.	0.909
CHM	RAB14	ENSAPLP00000029712	ENSAPLP00000032384	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.819
CHM	RAB26	ENSAPLP00000029712	ENSAPLP00000006832	Uncharacterized protein.	RAB26, member RAS oncogene family.	0.656
CHM	RAB30	ENSAPLP00000029712	ENSAPLP00000019440	Uncharacterized protein.	RAB30, member RAS oncogene family.	0.697
CHM	RAB9A	ENSAPLP00000029712	ENSAPLP00000001797	Uncharacterized protein.	RAB9A, member RAS oncogene family.	0.665
CHM	RAB9B	ENSAPLP00000029712	ENSAPLP00000001371	Uncharacterized protein.	RAB9B, member RAS oncogene family.	0.665
CHM	RABGGTB	ENSAPLP00000029712	ENSAPLP00000020747	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.944
CHM	U3J047_ANAPP	ENSAPLP00000029712	ENSAPLP00000012874	Uncharacterized protein.	Uncharacterized protein.	0.663
GDI2	CHM	ENSAPLP00000007195	ENSAPLP00000029712	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.646
GDI2	PTAR1	ENSAPLP00000007195	ENSAPLP00000008935	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Protein prenyltransferase alpha subunit repeat containing 1.	0.616
GDI2	RAB14	ENSAPLP00000007195	ENSAPLP00000032384	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB14, member RAS oncogene family.	0.878
GDI2	RAB9A	ENSAPLP00000007195	ENSAPLP00000001797	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB9A, member RAS oncogene family.	0.904
GDI2	RAB9B	ENSAPLP00000007195	ENSAPLP00000001371	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB9B, member RAS oncogene family.	0.904
GDI2	RABGGTB	ENSAPLP00000007195	ENSAPLP00000020747	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.775
GDI2	U3J047_ANAPP	ENSAPLP00000007195	ENSAPLP00000012874	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.865
PTAR1	CHM	ENSAPLP00000008935	ENSAPLP00000029712	Protein prenyltransferase alpha subunit repeat containing 1.	Uncharacterized protein.	0.909
PTAR1	GDI2	ENSAPLP00000008935	ENSAPLP00000007195	Protein prenyltransferase alpha subunit repeat containing 1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.616
PTAR1	RAB14	ENSAPLP00000008935	ENSAPLP00000032384	Protein prenyltransferase alpha subunit repeat containing 1.	RAB14, member RAS oncogene family.	0.567
PTAR1	RAB26	ENSAPLP00000008935	ENSAPLP00000006832	Protein prenyltransferase alpha subunit repeat containing 1.	RAB26, member RAS oncogene family.	0.643