STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CWC27CWC27 spliceosome associated cyclophilin. (462 aa)    
Predicted Functional Partners:
U3IYL3_ANAPP
Uncharacterized protein.
   
 0.958
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.926
CDC40
Cell division cycle 40.
    
 0.918
FRA10AC1
FRA10A associated CGG repeat 1.
   
 
 0.917
PRPF8
Pre-mRNA processing factor 8.
   
 0.900
MTREX
Mtr4 exosome RNA helicase.
   
  0.899
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
    
 0.896
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.876
SF3B1
Splicing factor 3b subunit 1.
   
 0.869
DHX38
DEAH-box helicase 38.
   
 0.865
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.