STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIX1Limb and CNS expressed 1. (275 aa)    
Predicted Functional Partners:
FAT3
FAT atypical cadherin 3.
   
 0.795
CWC25
CWC25 spliceosome associated protein homolog.
   
    0.731
C1orf109
Chromosome 1 open reading frame 109.
   
    0.731
RUBCNL
Rubicon like autophagy enhancer.
   
    0.705
RASSF2
Ras association domain family member 2.
   
  
 0.659
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
 
    
 0.635
SLCO4C1
Solute carrier organic anion transporter family member.
   
  
 0.620
PEX11B
Peroxisomal biogenesis factor 11 beta.
      
 0.608
ENSAPLP00000020167
Uncharacterized protein.
   
    0.598
MOB1B
MOB kinase activator 1B.
      
 0.595
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.