GTPBP8 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GTPBP8

GTP binding protein 8 (putative). (288 aa)

Predicted Functional Partners:

MTG1

0.839

GTPBP3

0.779

GPR89B

0.761

MALSU1

0.754

MRPL21

0.748

MRPL13

0.727

MRPL17

0.723

MRM3

0.720

MRPL15

0.710

MRPL3

0.707

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GPR89B	GTPBP8	ENSAPLP00000008293	ENSAPLP00000009147	Uncharacterized protein.	GTP binding protein 8 (putative).	0.761
GTPBP3	GTPBP8	ENSAPLP00000022465	ENSAPLP00000009147	GTP binding protein 3, mitochondrial.	GTP binding protein 8 (putative).	0.779
GTPBP3	MALSU1	ENSAPLP00000022465	ENSAPLP00000013072	GTP binding protein 3, mitochondrial.	Mitochondrial assembly of ribosomal large subunit 1.	0.715
GTPBP3	MRM3	ENSAPLP00000022465	ENSAPLP00000018315	GTP binding protein 3, mitochondrial.	Uncharacterized protein.	0.706
GTPBP3	MRPL13	ENSAPLP00000022465	ENSAPLP00000018566	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L13.	0.734
GTPBP3	MRPL15	ENSAPLP00000022465	ENSAPLP00000003978	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L15.	0.697
GTPBP3	MRPL17	ENSAPLP00000022465	ENSAPLP00000019048	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.686
GTPBP3	MRPL21	ENSAPLP00000022465	ENSAPLP00000021646	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L21.	0.734
GTPBP3	MRPL3	ENSAPLP00000022465	ENSAPLP00000010889	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.686
GTPBP3	MTG1	ENSAPLP00000022465	ENSAPLP00000017422	GTP binding protein 3, mitochondrial.	Mitochondrial ribosome associated GTPase 1.	0.730
GTPBP8	GPR89B	ENSAPLP00000009147	ENSAPLP00000008293	GTP binding protein 8 (putative).	Uncharacterized protein.	0.761
GTPBP8	GTPBP3	ENSAPLP00000009147	ENSAPLP00000022465	GTP binding protein 8 (putative).	GTP binding protein 3, mitochondrial.	0.779
GTPBP8	MALSU1	ENSAPLP00000009147	ENSAPLP00000013072	GTP binding protein 8 (putative).	Mitochondrial assembly of ribosomal large subunit 1.	0.754
GTPBP8	MRM3	ENSAPLP00000009147	ENSAPLP00000018315	GTP binding protein 8 (putative).	Uncharacterized protein.	0.720
GTPBP8	MRPL13	ENSAPLP00000009147	ENSAPLP00000018566	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L13.	0.727
GTPBP8	MRPL15	ENSAPLP00000009147	ENSAPLP00000003978	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L15.	0.710
GTPBP8	MRPL17	ENSAPLP00000009147	ENSAPLP00000019048	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.723
GTPBP8	MRPL21	ENSAPLP00000009147	ENSAPLP00000021646	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L21.	0.748
GTPBP8	MRPL3	ENSAPLP00000009147	ENSAPLP00000010889	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.707
GTPBP8	MTG1	ENSAPLP00000009147	ENSAPLP00000017422	GTP binding protein 8 (putative).	Mitochondrial ribosome associated GTPase 1.	0.839