STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM14ALSM14A mRNA processing body assembly factor. (461 aa)    
Predicted Functional Partners:
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.947
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 
 0.902
EDC3
Enhancer of mRNA decapping 3.
    
 
 0.889
DCP2
Decapping mRNA 2.
    
 
 0.810
DCP1A
Decapping mRNA 1A.
    
 
 0.740
EDC4
Enhancer of mRNA decapping 4.
    
 
 0.695
DCP1B
Decapping mRNA 1B.
    
 
 0.693
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 
 0.637
PTP4A1
Protein tyrosine phosphatase 4A1.
   
    0.623
U3J124_ANAPP
PAT1 domain-containing protein.
   
 
 0.605
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.