Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF13Ring finger protein 13. (381 aa)    
Predicted Functional Partners:
HSF2BP
Heat shock transcription factor 2 binding protein.
      
 0.795
TMEM183A
Transmembrane protein 183A.
      
 0.795
AP3D1
Adaptor related protein complex 3 subunit delta 1.
    
   0.700
FZD6
Frizzled class receptor 6; Belongs to the G-protein coupled receptor Fz/Smo family.
    
 
 0.662
NUS1
NUS1 dehydrodolichyl diphosphate synthase subunit.
    
 
 0.649
AP3S2
Adaptor related protein complex 3 subunit sigma 2.
    
 
 0.640
AP3S1
Adaptor related protein complex 3 subunit sigma 1.
    
 
 0.640
U3J5I9_ANAPP
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.632
CLCN7
Chloride channel protein.
    
   0.629
PCMT1
Protein-L-isoaspartate O-methyltransferase.
      
 0.611
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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