STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBBP6RB binding protein 6, ubiquitin ligase. (1858 aa)    
Predicted Functional Partners:
WDR33
WD_REPEATS_REGION domain-containing protein.
   
 
 0.978
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.977
UBE3D
Ubiquitin protein ligase E3D.
    
 0.972
WDR82
WD repeat domain 82.
    
 
 0.955
CSTF2
Cleavage stimulation factor subunit 2.
    
 
 0.897
ENSAPLP00000024497
Fip1 domain-containing protein.
    
 
 0.889
CPSF3
Uncharacterized protein.
    
 
 0.888
WDR77
WD repeat domain 77.
   
 
 0.888
ENSAPLP00000023486
Lactamase_B domain-containing protein.
    
 
 0.888
CPSF4L
Cleavage and polyadenylation specific factor 4 like.
    
 
 0.887
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.