STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC4Zinc finger CCHC-type containing 4. (508 aa)    
Predicted Functional Partners:
CCDC149
Coiled-coil domain containing 149.
      
 0.849
BOD1L1
Biorientation of chromosomes in cell division 1 like 1.
      
 0.849
ENSAPLP00000031284
ANAPC4_WD40 domain-containing protein.
 
    
 0.809
AASDH
Aminoadipate-semialdehyde dehydrogenase.
   
    0.733
SEPSECS
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase.
   
  
 0.683
LGI2
Leucine rich repeat LGI family member 2.
      
 0.675
SLC34A2
Solute carrier family 34 member 2.
   
  
 0.643
EAPP
E2F associated phosphoprotein.
      
 0.626
METTL16
U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]
   
  
 0.622
GPBP1
GC-rich promoter binding protein 1.
      
 0.621
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.