STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit. (458 aa)    
Predicted Functional Partners:
DDB1
Damage specific DNA binding protein 1.
    
 0.998
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
    
 0.998
RBX1
Ring-box 1.
    
 0.992
UVSSA
Uncharacterized protein.
    
 0.986
DDB2
Damage specific DNA binding protein 2.
    
 0.980
COPS5
COP9 signalosome subunit 5.
   
  0.973
COP1
COP1 E3 ubiquitin ligase.
    
 0.953
CUL4B
Cullin 4B; Belongs to the cullin family.
    
 0.945
CUL4A
Cullin 4A; Belongs to the cullin family.
    
 0.945
DDA1
DET1 and DDB1 associated 1.
    
  0.941
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.