STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS54VPS54 subunit of GARP complex. (976 aa)    
Predicted Functional Partners:
VPS53
VPS53 subunit of GARP complex.
   
 0.995
VPS51
VPS51 subunit of GARP complex.
   
 0.976
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 0.869
STX16
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.866
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.846
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.828
COG4
Cog4 domain-containing protein.
    
 0.828
COG3
Component of oligomeric golgi complex 3.
     
 0.826
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 
 0.826
COG7
Component of oligomeric golgi complex 7.
     
 0.824
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.