Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF4BPre-mRNA processing factor 4B. (1008 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.918
ZC3H18
Zinc finger CCCH-type containing 18.
   
   0.860
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.856
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.836
PRPF4
Pre-mRNA processing factor 4.
    
 
 0.836
TCERG1
Transcription elongation regulator 1.
   
 0.828
RBM25
RNA binding motif protein 25.
   
  0.826
ENSAPLP00000025359
PWI domain-containing protein.
   
  0.826
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
  0.796
USP39
Ubiquitin specific peptidase 39.
    
   0.782
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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