Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GIN1Gypsy retrotransposon integrase 1. (526 aa)    
Predicted Functional Partners:
RPS14
Ribosomal protein S14.
    
  0.829
EFCAB2
EF-hand calcium binding domain 2.
   
 
 0.770
SUGP2
SURP and G-patch domain containing 2.
      
 0.703
CGGBP1
CGG triplet repeat binding protein 1.
    
 0.678
PGBD5
PiggyBac transposable element derived 5.
   
 
 0.673
HARBI1
Harbinger transposase derived 1.
      
 0.666
CD74
CD74 molecule.
    
  0.653
RAG1
V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...]
      
 0.600
GALNT2
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.580
NAIF1
Nuclear apoptosis inducing factor 1.
      
 0.561
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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