STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U3IRV1_ANAPPUncharacterized protein. (1243 aa)    
Predicted Functional Partners:
FYCO1
GOLD domain-containing protein.
 
     0.917
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 
 0.613
MAP1LC3B
Uncharacterized protein.
   
 
 0.613
ZFYVE27
Zinc finger FYVE-type containing 27.
      
 0.611
ARL5B
ADP ribosylation factor like GTPase 5B; Belongs to the small GTPase superfamily. Arf family.
    
 0.588
SMDT1
Single-pass membrane protein with aspartate rich tail 1.
     
 0.503
GCNT2
Glucosaminyl (N-acetyl) transferase 2 (I blood group).
      
 0.491
TDRD7
Tudor domain containing 7.
      
 0.459
RAB3GAP1
RAB3 GTPase activating protein catalytic subunit 1.
      
 0.459
RAB7A
RAB7A, member RAS oncogene family.
    
 
 0.445
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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