U3IS38_ANAPP protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U3IS38_ANAPP

MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family. (212 aa)

Predicted Functional Partners:

B2M

0.833

RPA2

0.749

U3ITP1_ANAPP

0.569

U3J601_ANAPP

0.568

ENSAPLP00000019362

0.568

PDIA3

0.547

ABCB9

0.507

HSPA5

0.483

PDIA4

0.483

CALR

0.477

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB9	B2M	ENSAPLP00000001832	ENSAPLP00000001804	ATP binding cassette subfamily B member 9.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.709
ABCB9	CALR	ENSAPLP00000001832	ENSAPLP00000032112	ATP binding cassette subfamily B member 9.	Calreticulin.	0.729
ABCB9	HSPA5	ENSAPLP00000001832	ENSAPLP00000002711	ATP binding cassette subfamily B member 9.	Heat shock protein family A (Hsp70) member 5; Belongs to the heat shock protein 70 family.	0.472
ABCB9	PDIA3	ENSAPLP00000001832	ENSAPLP00000010077	ATP binding cassette subfamily B member 9.	Protein disulfide-isomerase.	0.844
ABCB9	PDIA4	ENSAPLP00000001832	ENSAPLP00000010398	ATP binding cassette subfamily B member 9.	Protein disulfide-isomerase.	0.573
ABCB9	RPA2	ENSAPLP00000001832	ENSAPLP00000002078	ATP binding cassette subfamily B member 9.	Replication protein A2.	0.709
ABCB9	U3IS38_ANAPP	ENSAPLP00000001832	ENSAPLP00000010061	ATP binding cassette subfamily B member 9.	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	0.507
B2M	ABCB9	ENSAPLP00000001804	ENSAPLP00000001832	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	ATP binding cassette subfamily B member 9.	0.709
B2M	CALR	ENSAPLP00000001804	ENSAPLP00000032112	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Calreticulin.	0.833
B2M	ENSAPLP00000019362	ENSAPLP00000001804	ENSAPLP00000019362	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.958
B2M	HSPA5	ENSAPLP00000001804	ENSAPLP00000002711	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Heat shock protein family A (Hsp70) member 5; Belongs to the heat shock protein 70 family.	0.422
B2M	PDIA3	ENSAPLP00000001804	ENSAPLP00000010077	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Protein disulfide-isomerase.	0.898
B2M	PDIA4	ENSAPLP00000001804	ENSAPLP00000010398	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Protein disulfide-isomerase.	0.713
B2M	U3IS38_ANAPP	ENSAPLP00000001804	ENSAPLP00000010061	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	0.833
B2M	U3ITP1_ANAPP	ENSAPLP00000001804	ENSAPLP00000010614	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.958
B2M	U3J601_ANAPP	ENSAPLP00000001804	ENSAPLP00000014928	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.937
CALR	ABCB9	ENSAPLP00000032112	ENSAPLP00000001832	Calreticulin.	ATP binding cassette subfamily B member 9.	0.729
CALR	B2M	ENSAPLP00000032112	ENSAPLP00000001804	Calreticulin.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.833
CALR	HSPA5	ENSAPLP00000032112	ENSAPLP00000002711	Calreticulin.	Heat shock protein family A (Hsp70) member 5; Belongs to the heat shock protein 70 family.	0.979
CALR	PDIA3	ENSAPLP00000032112	ENSAPLP00000010077	Calreticulin.	Protein disulfide-isomerase.	0.999