CLRN1 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLRN1

Clarin 1. (232 aa)

Predicted Functional Partners:

USH1C

0.849

USH1G

0.769

USH2A

0.749

WHRN

0.670

CIB2

0.670

ADGRV1

0.667

PDZD7

0.560

ENSAPLP00000017270

0.560

PCDH15

0.554

ANKS4B

0.547

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRV1	ANKS4B	ENSAPLP00000007911	ENSAPLP00000000377	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.485
ADGRV1	CIB2	ENSAPLP00000007911	ENSAPLP00000031523	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.512
ADGRV1	CLRN1	ENSAPLP00000007911	ENSAPLP00000010267	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Clarin 1.	0.667
ADGRV1	ENSAPLP00000017270	ENSAPLP00000007911	ENSAPLP00000017270	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.628
ADGRV1	PCDH15	ENSAPLP00000007911	ENSAPLP00000002805	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Protocadherin related 15.	0.538
ADGRV1	PDZD7	ENSAPLP00000007911	ENSAPLP00000000083	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	PDZ domain-containing protein.	0.628
ADGRV1	USH1C	ENSAPLP00000007911	ENSAPLP00000008438	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	USH1 protein network component harmonin.	0.862
ADGRV1	USH1G	ENSAPLP00000007911	ENSAPLP00000004795	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	USH1 protein network component sans.	0.758
ADGRV1	USH2A	ENSAPLP00000007911	ENSAPLP00000008347	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Usherin.	0.871
ADGRV1	WHRN	ENSAPLP00000007911	ENSAPLP00000022261	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Whirlin.	0.871
ANKS4B	ADGRV1	ENSAPLP00000000377	ENSAPLP00000007911	Ankyrin repeat and sterile alpha motif domain containing 4B.	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	0.485
ANKS4B	CLRN1	ENSAPLP00000000377	ENSAPLP00000010267	Ankyrin repeat and sterile alpha motif domain containing 4B.	Clarin 1.	0.547
ANKS4B	ENSAPLP00000017270	ENSAPLP00000000377	ENSAPLP00000017270	Ankyrin repeat and sterile alpha motif domain containing 4B.	Uncharacterized protein.	0.456
ANKS4B	PDZD7	ENSAPLP00000000377	ENSAPLP00000000083	Ankyrin repeat and sterile alpha motif domain containing 4B.	PDZ domain-containing protein.	0.456
ANKS4B	USH1C	ENSAPLP00000000377	ENSAPLP00000008438	Ankyrin repeat and sterile alpha motif domain containing 4B.	USH1 protein network component harmonin.	0.956
ANKS4B	USH2A	ENSAPLP00000000377	ENSAPLP00000008347	Ankyrin repeat and sterile alpha motif domain containing 4B.	Usherin.	0.481
ANKS4B	WHRN	ENSAPLP00000000377	ENSAPLP00000022261	Ankyrin repeat and sterile alpha motif domain containing 4B.	Whirlin.	0.620
CIB2	ADGRV1	ENSAPLP00000031523	ENSAPLP00000007911	Uncharacterized protein.	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	0.512
CIB2	CLRN1	ENSAPLP00000031523	ENSAPLP00000010267	Uncharacterized protein.	Clarin 1.	0.670
CIB2	ENSAPLP00000017270	ENSAPLP00000031523	ENSAPLP00000017270	Uncharacterized protein.	Uncharacterized protein.	0.548