SMYD2 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMYD2

SET and MYND domain containing 2. (547 aa)

Predicted Functional Partners:

CAMKMT

0.930

ENSAPLP00000028245

0.754

HELZ

0.695

SETD1B

0.671

SETD7

0.668

PLOD1

0.668

PLOD2

0.668

PARP1

0.644

ENSAPLP00000031478

0.644

PRDM6

0.629

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAMKMT	PLOD1	ENSAPLP00000031715	ENSAPLP00000011167	Calmodulin-lysine N-methyltransferase.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	0.900
CAMKMT	PLOD2	ENSAPLP00000031715	ENSAPLP00000022216	Calmodulin-lysine N-methyltransferase.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.	0.900
CAMKMT	PRDM6	ENSAPLP00000031715	ENSAPLP00000000753	Calmodulin-lysine N-methyltransferase.	PR/SET domain 6.	0.650
CAMKMT	SETD1B	ENSAPLP00000031715	ENSAPLP00000004792	Calmodulin-lysine N-methyltransferase.	SET domain containing 1B, histone lysine methyltransferase.	0.913
CAMKMT	SMYD2	ENSAPLP00000031715	ENSAPLP00000010381	Calmodulin-lysine N-methyltransferase.	SET and MYND domain containing 2.	0.930
ENSAPLP00000028245	ENSAPLP00000031478	ENSAPLP00000028245	ENSAPLP00000031478	Uncharacterized protein.	PARP-type domain-containing protein.	0.720
ENSAPLP00000028245	PARP1	ENSAPLP00000028245	ENSAPLP00000014006	Uncharacterized protein.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.720
ENSAPLP00000028245	SETD1B	ENSAPLP00000028245	ENSAPLP00000004792	Uncharacterized protein.	SET domain containing 1B, histone lysine methyltransferase.	0.893
ENSAPLP00000028245	SETD7	ENSAPLP00000028245	ENSAPLP00000006625	Uncharacterized protein.	SET domain containing 7, histone lysine methyltransferase.	0.655
ENSAPLP00000028245	SMYD2	ENSAPLP00000028245	ENSAPLP00000010381	Uncharacterized protein.	SET and MYND domain containing 2.	0.754
ENSAPLP00000031478	ENSAPLP00000028245	ENSAPLP00000031478	ENSAPLP00000028245	PARP-type domain-containing protein.	Uncharacterized protein.	0.720
ENSAPLP00000031478	SMYD2	ENSAPLP00000031478	ENSAPLP00000010381	PARP-type domain-containing protein.	SET and MYND domain containing 2.	0.644
HELZ	SMYD2	ENSAPLP00000007456	ENSAPLP00000010381	Helicase with zinc finger.	SET and MYND domain containing 2.	0.695
PARP1	ENSAPLP00000028245	ENSAPLP00000014006	ENSAPLP00000028245	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	Uncharacterized protein.	0.720
PARP1	SMYD2	ENSAPLP00000014006	ENSAPLP00000010381	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	SET and MYND domain containing 2.	0.644
PLOD1	CAMKMT	ENSAPLP00000011167	ENSAPLP00000031715	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	Calmodulin-lysine N-methyltransferase.	0.900
PLOD1	PLOD2	ENSAPLP00000011167	ENSAPLP00000022216	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.	0.989
PLOD1	PRDM6	ENSAPLP00000011167	ENSAPLP00000000753	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	PR/SET domain 6.	0.650
PLOD1	SETD1B	ENSAPLP00000011167	ENSAPLP00000004792	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	SET domain containing 1B, histone lysine methyltransferase.	0.666
PLOD1	SMYD2	ENSAPLP00000011167	ENSAPLP00000010381	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.	SET and MYND domain containing 2.	0.668